Glossary

choE and vapA

Virulence encoding genes of Prescottella equi. choE encodes for cholesterol oxidase and vapA encodes for VAPA protein which prevents phagolysomal maturation.

maintenance hosts,

This is hosts where a pathogen can persist in the absence of other hosts i.e. the pathogen will continue to be shed and transmitted to other hosts of the same species.

abscess

An accumulation of pus within a fibrous capsule, usually surrounded by a band of inflammatory cells.

Acquired resistance

When a particular microorganism obtains the ability to resist the activity of a particular antimicrobial to which it was previously susceptible.

adhesins

Adhesins are cell-surface components or appendages of bacteria that facilitate adhesion or adherence to other cells or to surfaces, usually in the host they are infecting or living in

aerobic

Microorganisms that prefer to grow in the presence of oxygen. Most will not grow if deprived of oxygen.

aetiology

The cause of a disease or condition. In the case of infectious disease, it is an infectious agent.

Anchoring

Firm attachment of bacterial structures to host tissue surfaces

antibiotic

Are medicines that either kill or inhibit bacteria

antigen detection tests

Antibodies are manufactured that specifically bind to the surface of their homologous antigen on the surface of infectious agents. The binding is observed as agglutination or a colour change depending on the test type used.

Antimicrobial resistance

The mechanisms microorganisms use to resist the action of antimicrobials.

antimicrobial susceptibility testing

These are in vitro tests done on purified bacterial and fungal cultures that detect resistance to antibacterials and antifungals.

atopy

Atopy is the genetic tendency to develop allergic diseases such as allergic rhinitis, asthma and atopic dermatitis (eczema).

Bacterial colony

A bacterial colony which is produced on solid surfaces such as bacterial growth agar is produced from one mother cell. Millions of clones exist in a colony.

bacteriophages

These are viruses that only infect bacteria. Virulent phages are those that destroy bacteria and can be used instead or together with antibiotics

biofilms

Biofilms are communities of bacteria, either as a single species or several species that adhere to surfaces and produce a profuse, protective extracellular polymer substrate/matrix (EPS).

biohazard

Biological hazards are organic substances that present a threat to the health of people and other living organisms

biosafety

The application of knowledge, techniques and equipment to prevent personal, laboratory and environmental exposure to potentially infectious agents or biohazards.

biosecurity

Procedures or measures designed to protect a population against harmful biological or biochemical substances.

BSL3

Biosafety level 3 (PC3). Microbes that can cause serious or deadly diseases via the inhalation route.

cefovecin (Convenia)

A long-acting 3rd generation cephalosporin with predominantly a gram-positive spectrum. Registered for skin and urinary tract infections in dogs and cats

cellulitis

Cellulitis is an acute inflammatory condition of the dermis and subcutaneous tissue. It is usually caused by bacteria.

cetaceans

Marine mammals = whales, dolphins and porpoises

chronic disease

These are diseases that last for a long time that become progressively worse. An example of a chronic infectious disease is Ovine Johne's disease caused by Mycobacterium avium subsp. paratuberculosis

colic

Abdominal pain. Evidenced by discomfort, straining to urinate stance, lying down a lot, teeth grinding, kicking at abdomen and rolling

colonisation

The establishment of micro-organisms at the portal of entry into the host. This is usually on surfaces such as all mucosae and the skin.

commensal microflora

Microbes that are resident on the surface of mucosae and skin and often pose a barrier to infection. However, opportunistic pathogens can also be part of this population.

communicable disease

These are infectious agents that are spread between individuals. Communicable diseases that are easily transmitted are sometimes known as contagious disease.

conjugation

This is when organisms exchange genetic material via direct contact with each other. Bacteria use the pilus as a bridge.

cross resistance

Resistance to other drugs within an antibiotic class or to unrelated drugs

cryptobiotic

Cryptobiosis is a state of extreme inactivity of an organism in response to adverse conditions i.e. desiccation, freezing, high osmotic pressures. During this time the organism does not reproduce or show any signs of metabolic activity. The tick layered endospore is a cryptobiotic state. D

Dead-end hosts

Hosts from which infectious agents are not transmitted to other susceptible hosts.

diarrhoea

Loose watery stool

Differential diagnosis

the process of differentiating between two or more conditions which share similar signs.

disseminated intravascular coagulopathy (DIC)

DIC is a life-threatening condition that occurs when there are countless small blood clots throughout the body leading to clotting factor depletion. Without enough clotting factors uncontrollable bleeding occurs both internally and externally.

DIVA vaccine

This is a vaccine where the measurable antibodies against it are different to a natural infection. This means that the vaccine can be used in animals for export where evidence of serological freedom of a specific disease-causing agent is required.

DNA topoisomerase

DNA topoisomerases are enzymes that catalyze changes in the topological state of DNA, interconverting relaxed and supercoiled forms, linked and unlinked species, and knotted and unknotted

Docking

Temporary surface attachment by bacteria using electrostatic or hydrostatic forces

drug withdrawal times

The withdrawal period is that time after administration of antibiotic has ceased when the drug concentration in the food product (meat, milk, eggs) is below the maximum allowable residue limit

dysbiosis

Destruction or disruption (imbalance) of the normal microflora on or in the body. Example: It occurs when there is broad-spectrum antibiotic therapy

dysentery

Severe diarrhoea of predominantly the large intestine where there is blood and mucus in the stool.

dysphagia

Inability to swallow food or drink

empirical

Treatments that are based on observation and experience, rather than scientific evidence. Usually applied in life-threatening infections when immediate treatment is necessary.

end arteries

End arteries or terminal arteries are those with no collateral circulation and supply oxygenated blood to a portion of tissue. They are found in the brain, liver, kideys and intestines.

Endogenous

Having an internal cause or origin.

endospore

A tough intracellular structure produced by some members of the Bacillota.

epidermitis

inflammation of the epidermis

exospores

Exospores are produced by separating the spore from the mother cell by a septum. Exospores are produced by some Actinomycetota.

exotoxaemia

Bacterial exotoxins in thebloodstream

Extended-spectrum beta-lactamases (ES

Extended-spectrum beta-lactamases (ESBLs) are enzymes that confer resistance to most beta-lactam antibiotics, including penicillins, cephalosporins, and the monobactam aztreonam. Infections with ESBL-producing organisms have been associated with poor outcomes

facultative anaerobic

Bacteria that can grow both in the presence of oxygen (aerobic) and when oxygen is not present (anaerobic).

fasciitis

inflammation of the fascia

folliculitis

Inflammation of the hair follicles

furunculosis

abscesses within the hair follicles

fusidic acid

It acts as a bacterial protein synthesis inhibitor

Gangrenous

Necrosis of tissues associated with lack of blood flow. The tissues change colour to plum-red or deep purple.

granuloma

A tissue mass that is associated with chronic inflammation. This tissue is rich in macrophages and will contain other white blood cells like neutrophils. Infectious agents are the most common cause of granulomas.

haematology;

Haematology is the branch of medicine concerned with the study of the cause, prognosis, treatment, and prevention of diseases related to blood. For most animals this will involve the measurement of different components of the blood and microscopic examination of blood films.

haematuria

Blood in the urine

haemoconcentration

Increased concentration of solids and cells in blood caused by loss of fluid.

haemoglobinuria

Presence of haemoglobin in the urine. The urine has a red or brown discolouration

Halophilic

Salt-loving

hazard 

A hazard is a process, phenomenon or human activity that may cause loss of life, injury or other health impacts

Horner syndrome

The most prominent clinical signs of equine Horner's syndrome are unilateral drooping eyelid, local sweating and increased cutaneous temperature in the denervated area.

hypoxia

Low levels of oxygen in tissues

in extremis

At the point of death

Integron 1
Intrinsic Resistance

This is an inherent characteristic of a particular species of microbe to a particular anti-infective agent.

invasins

Invasins are proteins produced by pathogenic bacteria that interact with specific receptors on host cells that allow them to invade host cells.

Koch's postulates

These are 4 postulates published by Robert Kock in 1890. Due to the multifactorial nature of some diseases, they are no longer validate for all diseases. However, they do provide a good framework for understanding infectious disease.

lecithinase

A enzyme produced by a number of different pathogenic bacteria that breakdown lecithinase, a phospholipid in the cell membrane of cells like red blood cells.

lymphangiectasia

Superficial lymphatic dilatation caused by a wide range of scarring processes

MASTITIS

Mastitis is defined as an inflammation of the mammary gland usually in response to a bacterial infection

mesophilic

This refer to bacteria that grow well between 20c to 45 C. Most bacterial pathogens are in this group with an optimum growth temperature of 35C.

methicillin resistance Staphylococcus aureus

Staphylococcus aureus and other staphylococci that have the mecA gene alter their penicillin binding proteins. This is observed as resistance to methicillin (or oxacillin, cefoxitin). These bacteria tend to be multidrug resistant.

miliary

Numerous small lesions resembling millet seeds in size and shape

minimum inhibitory concentration (MIC)

The lowest concentration of an antimicrobial that will inhibit growth of the target microbe.

mitogen

A mitogen is a substance that induces or stimulates mitosis leading to cell proliferation.

Mobile class 1 integrons

These are both transposons and and insertion nucleotide sequences that often carry gene cassettes of antibiotic resistance genes that can be transferred to bacterial plasmids and chromosomes.

Multi-drug
multidrug resistance

A bacterium that has acquired resistance to at least one antibiotic in 3 or more antibiotic categories is considered to be multidrug resistant

Mutation Prevention Concentration (MPC)

The lowest concentration of antimicrobial required to stop the growth of the least susceptible bacterium in a large bacterial population.

myiasis

Infection of fly larvae or maggots in living tissue

neurolisteriosis

Infection of the central nervous system by Listeria

nosocomial

Hospital-acquired infections. Clinical signs develop after 72 hours of hospitalisation.

notifiable disease

These are often communicable diseases that are either exotic to a country or have serious consequences to animals, animal industries and people. Each Australian State and Territory and the Federal government has a list of these diseases i.e. foot-and-mouth disease.

occupational disease

A disease or disorder that is caused by the work or working conditions. Infectious diseases can also be occupational.

oedema

Localised or generalised swelling of the body tissues due to a build up of fluid.

opisthotonus

Abnormal posture due to spastic contraction of the extensor muscles of the neck, trunk and lower extremities

opportunistic pathogen

Opportunistic pathogens are those that are usually present in the animal or in its environment that only cause disease when the host's resistance to disease has been altered.

opportunistic pathogens

These are micro-organisms that only cause disease when given an opportunity i.e. when the host has a weakened immune system or when mucosal or skin barriers are damaged. They are often part of the commensal microflora of the host.

osteophagia

Eating or chewing of bones by herbivorous animals craving phosphorus

otitis

Inflammation of the ear. otitis externa is inflammation of the outer ear; otitis media of the middle ear and otitis interna of the inner ear. Clinical signs are characterised by smelly ears, ear scratching and head shaking together with pain vocalisation. Otitis interna can result in neurological defects such as circling and a head tilt.

pan-drug
pan-drug resistance

Resistance to every class used to treat these bacteria

parenteral

Parenteral describes any drug administration other than oral

pathogen

The causative agent of a disease

pathogenicity

the ability to cause disease

pathognomonic

Pathognomonic is a clinical sign or lesion that is indicative of a particular disease. Its presence is diagnostic for that disease.

Penicillin

A beta-lactam class of antibiotics that inhibit bacterial cell-wall synthesis

petechiae

Pin-point round red to purple spots in the skin and other tissues caused by haemorrhaging.

pharmacodynamics

Effects of drugs and their mechanism of action

pharmacokinetics

Movement of drugs within the body

phenotypic resistance pattern

Observable or expressed antimicrobial resistances

phosphomycin (fosfomycin)

It is bactericidal and inhibits bacterial cell wall biogenesis by inactivating the enzyme MurA responsible for linking the building blocks of peptidoglycan

phylogenetic tree 

A phylogenetic tree represents the evolutionary relationships among organisms. This is mainly via genetic relatedness, but physical characteristics are taken into account.

point mutation

A point mutation occurs in a genome when a single base pair is added, deleted or changed.

poison

These are substances when ingested cause disease.

poly-gamma-D-glutamic acid

A polymer produced by bacteria from the amino acid glutamic acid. It protects B. anthracis from Complement mediated opsonisation. It is a major component of the Japanese fermented food natto. It binds heavy metals like lead when used in ultrafiltration membranes.

polydipsia

Excessive and frequent drinking of water

polymicrobial infections

Two of more bacterial species are present in an infection

polyuria

Frequent and excessive urination, often goes together with polydipsia

PPE

Personal protective equipment. This includes, gloves, mask, safety glasses, face shields, boots etc.

Probiotic

Probiotics are live non-pathogenic microorganisms that are administered in large numbers to promote a healthy intestine.

prognosis

The likely outcome or course of a disease;

pseudomembranous colitis

This is when a false membrane, consisting of inflammatory cells and exudate and necrotic cells forms on the surface of the colon. Initially the lesions appear as nodules but then coalesce.

pyogenic

Pus causing. Pus is an exudate consisting of necrotic cells, neutrophils and other inflammatory cells, inflammatory products, and if infectious bacteria or fungi.

pyogranuloma

This is a chronic inflammatory lesion characterised by the presence macrophages and neutrophils

quarantine

A quarantine is a restriction on the movement of people, animals and goods which is intended to prevent the spread of infectious agents or pests

quorum sensing

Cell-to-cell communication by bacteria through the production of signaling molecules known as autoinducers.

reverse zoonosis

An infectious or parasitic agent that is transmitted from humans to animals

rifampicin

Is an ansamycin that inhibits bacterial DNA-dependent RNA synthesis by inhibiting bacterial DNA-dependent RNA polymerase

secondary pathogens

This is an infection with a second infectious agent whilst an individual is being treated for the primary or first pathogen. A classic example is a horse that develops upper respiratory tract infection caused by equine herpesvirus and a week later develops a snotty nose due to Streptococcus equi subsp. zooepidemicus.

septicaemia

Presence of bacteria and their toxins in the bloodstream

serum

The protein-rich component of blood after it has clotted.

Swine dysentery

Swine dysentery is a large intestine disease caused by the anaerobic spirochaete bacterium Brachyspira hyodysenteriae

terminal bacteraemia

Presence of proliferating bacteria in the bloodstream just prior to death.

Thermophilic

These are microorganisms that grow at high temperatures, usually between 41 to 122 C. Intestinal Campylobacter species are examples of thermophilic bacteria that grow at 42C.

transcription

The process the cell uses to make a RNA copy of a piece of DNA. This is knowns as messenger RNA and will be used as a template for the ribosomes to manufacture proteins.

transduction

This is when "foreign" DNA is introduced into a bacterium by a bacterial virus known as a bacteriophage.

type IV hypersensitivity

Often called delayed-type hypersensitivity as it takes 1 to 3 days to develop.This response involves the interaction of T cells, and macrophages.

typhlocolitis

Inflammation of both the caecum and colon

uraemic

Presence of excessive urea, a breakdown product of protein, in the blood

WOAH (was OIE)

World Organisation for Animal Health. A global organisation that disseminates information on animal diseases, especially those that impact on trade and public health.

Zoonosis

An infectious or parasitic agent which can be transmitted to humans from animals.

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Bacterial and Fungal Diseases of Animals Copyright © by Jackie Picard. All Rights Reserved.